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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
- Zuffa, Simone;
- Schmid, Robin;
- Bauermeister, Anelize;
- P. Gomes, Paulo Wender;
- Caraballo-Rodriguez, Andres M.;
- ... Kang, Kyo Bin;
- 외 103명
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74초록
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health. © The Author(s) 2024.
키워드
BILE-ACIDS; NATURAL-PRODUCTS; GUT; YERSINIABACTIN; VISUALIZATION; VIRULENCE
- 제목
- microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
- 저자
- Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; P. Gomes, Paulo Wender; Caraballo-Rodriguez, Andres M.; El Abiead, Yasin; Aron, Allegra T.; Gentry, Emily C.; Zemlin, Jasmine; Meehan, Michael J.; Avalon, Nicole E.; Cichewicz, Robert H.; Buzun, Ekaterina; Terrazas, Marvic Carrillo; Hsu, Chia-Yun; Oles, Renee; Ayala, Adriana Vasquez; Zhao, Jiaqi; Chu, Hiutung; Kuijpers, Mirte C. M.; Jackrel, Sara L.; Tugizimana, Fidele; Nephali, Lerato Pertunia; Dubery, Ian A.; Madala, Ntakadzeni Edwin; Moreira, Eduarda Antunes; Costa-Lotufo, Leticia Veras; Lopes, Norberto Peporine; Rezende-Teixeira, Paula; Jimenez, Paula C.; Rimal, Bipin; Patterson, Andrew D.; Traxler, Matthew F.; Pessotti, Rita de Cassia; Alvarado-Villalobos, Daniel; Tamayo-Castillo, Giselle; Chaverri, Priscila; Escudero-Leyva, Efrain; Quiros-Guerrero, Luis-Manuel; Bory, Alexandre Jean; Joubert, Juliette; Rutz, Adriano; Wolfender, Jean-Luc; Allard, Pierre-Marie; Sichert, Andreas; Pontrelli, Sammy; Pullman, Benjamin S.; Bandeira, Nuno; Gerwick, William H.; Gindro, Katia; Massana-Codina, Josep; Wagner, Berenike C.; Forchhammer, Karl; Petras, Daniel; Aiosa, Nicole; Garg, Neha; Liebeke, Manuel; Bourceau, Patric; Kang, Kyo Bin; Gadhavi, Henna; de Carvalho, Luiz Pedro Sorio; Silva dos Santos, Mariana; Pérez-Lorente, Alicia Isabel; Molina-Santiago, Carlos; Romero, Diego; Franke, Raimo; Brönstrup, Mark; Vera Ponce de León, Arturo; Pope, Phillip Byron; La Rosa, Sabina Leanti; La Barbera, Giorgia; Roager, Henrik M.; Laursen, Martin Frederik; Hammerle, Fabian; Siewert, Bianka; Peintner, Ursula; Licona-Cassani, Cuauhtemoc; Rodriguez-Orduña, Lorena; Rampler, Evelyn; Hildebrand, Felina; Koellensperger, Gunda; Schoeny, Harald; Hohenwallner, Katharina; Panzenboeck, Lisa; Gregor, Rachel; O’Neill, Ellis Charles; Roxborough, Eve Tallulah; Odoi, Jane; Bale, Nicole J.; Ding, Su; Sinninghe Damsté, Jaap S.; Guan, Xue Li; Cui, Jerry J.; Ju, Kou-San; Silva, Denise Brentan; Silva, Fernanda Motta Ribeiro; da Silva, Gilvan Ferreira; Koolen, Hector H. F.; Grundmann, Carlismari; Clement, Jason A.; Mohimani, Hosein; Broders, Kirk; McPhail, Kerry L.; Ober-Singleton, Sidnee E.; Rath, Christopher M.; McDonald, Daniel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C.
- 발행일
- 2024-02
- 유형
- Article
- 저널명
- Nature Microbiology
- 권
- 9
- 호
- 2
- 페이지
- 336 ~ 345