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Mutation effects on FAS1 domain 4 based on structure and solubility

Authors
Kim, Dong GunChong, Song-HoShin, SeokminHam, Sihyun
Issue Date
Mar-2022
Publisher
Elsevier B.V.
Keywords
Corneal dystrophy; FAS1 domain; Molecular dynamics simulations; Protein aggregation; Solvation free energy
Citation
Biochimica et Biophysica Acta - Proteins and Proteomics, v.1870, no.3, pp 1 - 7
Pages
7
Journal Title
Biochimica et Biophysica Acta - Proteins and Proteomics
Volume
1870
Number
3
Start Page
1
End Page
7
URI
https://scholarworks.sookmyung.ac.kr/handle/2020.sw.sookmyung/152901
DOI
10.1016/j.bbapap.2021.140746
ISSN
1570-9639
1878-1454
Abstract
Mutations in the fasciclin 1 domain 4 (FAS1–4) of transforming growth factor β-induced protein (TGFBIp) are associated with insoluble extracellular deposits and corneal dystrophies (CDs). The decrease in solubility upon mutation has been implicated in CD; however, the exact molecular mechanisms are not well understood. Here, we performed molecular dynamics simulations followed by solvation thermodynamic analyses of the FAS1–4 domain and its three mutants—R555W, R555Q, and A546T—linked to granular corneal dystrophy type 1, Thiel-Behnke corneal dystrophy and lattice corneal dystrophy, respectively. We found that both R555W and R555Q mutants have less affinity toward solvent water relative to the wild-type protein. In the R555W mutant, a remarkable increase in solvation free energy was observed because of the structural changes near the mutation site. The mutation site W555 is buried in other hydrophobic residues, and R557 simultaneously forms salt bridges with E554 and D561. In the R555Q mutant, the increase in solvation free energy is caused by structural rearrangements far from the mutation site. R558 separately forms salt bridges with D575, E576, and E598. Thus, we thus identified the relationship between the decrease in solubility and conformational changes caused by mutations, which may be useful in designing potential therapeutics and in blocking FAS1 aggregation related to CD. © 2021 Elsevier B.V.
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